Your guitar recording obviously has a wide dynamic range, from very soft to very loud. This could be the way it is supposed to be (i.e. a very dynamic piece of music) but it is also because we're forced to mic closer to minimise the room reverb. Miking closer tends to accentuate volume changes from movement, playing inconsistencies and playing dynamics (usually the room helps even these out).
A dynamic recording isn't bad
per se, but it takes a high quality recording and a similarly high quality playback system. Otherwise the quieter sections tend to get lost in in the noise floor (background noise).
Miking a bit further away helps - you get a smoother dynamic response at the expense of a bit more room reverb (you could also use more dampening to help lessen the room sound).
Another option is to use some subtle compression on the recording, which reduces the dynamic range by boosting the quieter bits and cutting the louder bits. This can also end up boosting the room noise and must be done subtly to keep the sound as natural as possible (especially with classic guitar). More on compression here:
http://ratcliffe.co.za/articles/compression.shtml